PRODIGY (PROtein binDIng enerGY prediction) webserver predicts the binding affinity in protein-protein complexes. To use PRODIGY you just need to provide the three-dimensional structure of your complex/complexes in PDB/mmCIF format or the ID of its PDB entry. Depending on the input data to be used your request is expected to take a few seconds before you receive the results. If an e-mail address is provided, you will be notified when your job has finished.
Number of successfully served jobs since July 2016: 5247
PRODIGY-Webinar: learn more about PRODIGY in the 7th BioExcel webinar. YouTube
Please provide the PDB ID of the target complex or submit a file in PDB or mmCIF format.
An archive of multiple PDB/mmCIF files (.tar, .tgz, .zip, .bz2 or .tar.gz) can also be provided, together with the interacting chains.
Once you click on the button, your job will be processed. If you have provided an email address, the link to the output page will be emailed to you.